[ol7_developer_EPEL] python2-biopython-1.75-1.el7.x86_64

Name:	python2-biopython
Version:	1.75
Release:	1.el7
Architecture:	x86_64
Group:	Unspecified
Size:	17089368
License:	MIT and BSD
RPM:	python2-biopython-1.75-1.el7.x86_64.rpm
Source RPM:	python-biopython-1.75-1.el7.src.rpm
Build Date:	Mon Nov 25 2019
Build Host:	x86-ol7-builder-01.us.oracle.com
Vendor:	Oracle America
URL:	https://biopython.org/
Summary:	Python tools for computational molecular biology
Description:	A set of freely available Python tools for computational molecular biology.

Filelist (Show Changelog) (Show related packages)

/
- usr
  - lib64
    
    python2.7
    
    site-packages
    
    Bio
    
    Affy
    
    CelFile.py
    
    CelFile.pyc
    
    CelFile.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    Align
    
    AlignInfo.py
    
    AlignInfo.pyc
    
    AlignInfo.pyo
    
    Applications
    
    _ClustalOmega.py
    
    _ClustalOmega.pyc
    
    _ClustalOmega.pyo
    
    _Clustalw.py
    
    _Clustalw.pyc
    
    _Clustalw.pyo
    
    _Dialign.py
    
    _Dialign.pyc
    
    _Dialign.pyo
    
    _MSAProbs.py
    
    _MSAProbs.pyc
    
    _MSAProbs.pyo
    
    _Mafft.py
    
    _Mafft.pyc
    
    _Mafft.pyo
    
    _Muscle.py
    
    _Muscle.pyc
    
    _Muscle.pyo
    
    _Prank.py
    
    _Prank.pyc
    
    _Prank.pyo
    
    _Probcons.py
    
    _Probcons.pyc
    
    _Probcons.pyo
    
    _TCoffee.py
    
    _TCoffee.pyc
    
    _TCoffee.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    _aligners.c
    
    _aligners.so
    
    substitution_matrices
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    data
    
    BENNER22
    
    BENNER6
    
    BENNER74
    
    BLOSUM45
    
    BLOSUM50
    
    BLOSUM62
    
    BLOSUM80
    
    BLOSUM90
    
    DAYHOFF
    
    FENG
    
    GENETIC
    
    GONNET1992
    
    JOHNSON
    
    JONES
    
    LEVIN
    
    MCLACHLAN
    
    MDM78
    
    NUC.4.4
    
    PAM250
    
    PAM30
    
    PAM70
    
    RAO
    
    RISLER
    
    SCHNEIDER
    
    STR
    
    AlignIO
    
    ClustalIO.py
    
    ClustalIO.pyc
    
    ClustalIO.pyo
    
    EmbossIO.py
    
    EmbossIO.pyc
    
    EmbossIO.pyo
    
    FastaIO.py
    
    FastaIO.pyc
    
    FastaIO.pyo
    
    Interfaces.py
    
    Interfaces.pyc
    
    Interfaces.pyo
    
    MafIO.py
    
    MafIO.pyc
    
    MafIO.pyo
    
    MauveIO.py
    
    MauveIO.pyc
    
    MauveIO.pyo
    
    MsfIO.py
    
    MsfIO.pyc
    
    MsfIO.pyo
    
    NexusIO.py
    
    NexusIO.pyc
    
    NexusIO.pyo
    
    PhylipIO.py
    
    PhylipIO.pyc
    
    PhylipIO.pyo
    
    StockholmIO.py
    
    StockholmIO.pyc
    
    StockholmIO.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    Alphabet
    
    IUPAC.py
    
    IUPAC.pyc
    
    IUPAC.pyo
    
    Reduced.py
    
    Reduced.pyc
    
    Reduced.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    Application
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    Blast
    
    Applications.py
    
    Applications.pyc
    
    Applications.pyo
    
    NCBIWWW.py
    
    NCBIWWW.pyc
    
    NCBIWWW.pyo
    
    NCBIXML.py
    
    NCBIXML.pyc
    
    NCBIXML.pyo
    
    ParseBlastTable.py
    
    ParseBlastTable.pyc
    
    ParseBlastTable.pyo
    
    Record.py
    
    Record.pyc
    
    Record.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    CAPS
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    Cluster
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    _cluster.so
    
    cluster.c
    
    cluster.h
    
    clustermodule.c
    
    Compass
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    Crystal
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    Data
    
    CodonTable.py
    
    CodonTable.pyc
    
    CodonTable.pyo
    
    IUPACData.py
    
    IUPACData.pyc
    
    IUPACData.pyo
    
    SCOPData.py
    
    SCOPData.pyc
    
    SCOPData.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    Emboss
    
    Applications.py
    
    Applications.pyc
    
    Applications.pyo
    
    Primer3.py
    
    Primer3.pyc
    
    Primer3.pyo
    
    PrimerSearch.py
    
    PrimerSearch.pyc
    
    PrimerSearch.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    Entrez
    
    DTDs
    
    Docsum_3_0.dtd
    
    Docsum_3_0.mod.dtd
    
    Docsum_3_1.dtd
    
    Docsum_3_1.mod.dtd
    
    Docsum_3_2.dtd
    
    Docsum_3_2.mod.dtd
    
    Docsum_3_3.dtd
    
    Docsum_3_3.mod.dtd
    
    Docsum_3_4.dtd
    
    Docsum_3_4.mod.dtd
    
    EMBL_General.dtd
    
    EMBL_General.mod.dtd
    
    GenBank_General.dtd
    
    GenBank_General.mod.dtd
    
    HomoloGene.dtd
    
    HomoloGene.mod.dtd
    
    INSD_INSDSeq.dtd
    
    INSD_INSDSeq.mod.dtd
    
    MMDB.dtd
    
    MMDB.mod.dtd
    
    MMDB_Chemical_graph.dtd
    
    MMDB_Chemical_graph.mod.dtd
    
    MMDB_Features.dtd
    
    MMDB_Features.mod.dtd
    
    MMDB_Structural_model.dtd
    
    MMDB_Structural_model.mod.dtd
    
    NCBI_Access.dtd
    
    NCBI_Access.mod.dtd
    
    NCBI_Biblio.dtd
    
    NCBI_Biblio.mod.dtd
    
    NCBI_BioSource.dtd
    
    NCBI_BioSource.mod.dtd
    
    NCBI_BioTree.dtd
    
    NCBI_BioTree.mod.dtd
    
    NCBI_Blast4.dtd
    
    NCBI_Blast4.mod.dtd
    
    NCBI_BlastDL.dtd
    
    NCBI_BlastDL.mod.dtd
    
    NCBI_BlastOutput.dtd
    
    NCBI_BlastOutput.mod.dtd
    
    NCBI_Cdd.dtd
    
    NCBI_Cdd.mod.dtd
    
    NCBI_Cn3d.dtd
    
    NCBI_Cn3d.mod.dtd
    
    NCBI_Entity.mod.dtd
    
    NCBI_Entrez2.dtd
    
    NCBI_Entrez2.mod.dtd
    
    NCBI_Entrezgene.dtd
    
    NCBI_Entrezgene.mod.dtd
    
    NCBI_FeatDef.dtd
    
    NCBI_FeatDef.mod.dtd
    
    NCBI_GBSeq.dtd
    
    NCBI_GBSeq.mod.dtd
    
    NCBI_Gene.dtd
    
    NCBI_Gene.mod.dtd
    
    NCBI_General.dtd
    
    NCBI_General.mod.dtd
    
    NCBI_ID1Access.dtd
    
    NCBI_ID1Access.mod.dtd
    
    NCBI_ID2Access.dtd
    
    NCBI_ID2Access.mod.dtd
    
    NCBI_MedArchive.dtd
    
    NCBI_MedArchive.mod.dtd
    
    NCBI_Medlars.dtd
    
    NCBI_Medlars.mod.dtd
    
    NCBI_Medline.dtd
    
    NCBI_Medline.mod.dtd
    
    NCBI_Mim.dtd
    
    NCBI_Mim.mod.dtd
    
    NCBI_Mime.dtd
    
    NCBI_Mime.mod.dtd
    
    NCBI_ObjPrt.dtd
    
    NCBI_ObjPrt.mod.dtd
    
    NCBI_Organism.dtd
    
    NCBI_Organism.mod.dtd
    
    NCBI_PCAssay.dtd
    
    NCBI_PCAssay.mod.dtd
    
    NCBI_PCSubstance.dtd
    
    NCBI_PCSubstance.mod.dtd
    
    NCBI_Project.dtd
    
    NCBI_Project.mod.dtd
    
    NCBI_Protein.dtd
    
    NCBI_Protein.mod.dtd
    
    NCBI_Pub.dtd
    
    NCBI_Pub.mod.dtd
    
    NCBI_PubMed.dtd
    
    NCBI_PubMed.mod.dtd
    
    NCBI_RNA.dtd
    
    NCBI_RNA.mod.dtd
    
    NCBI_Remap.dtd
    
    NCBI_Remap.mod.dtd
    
    NCBI_Rsite.dtd
    
    NCBI_Rsite.mod.dtd
    
    NCBI_ScoreMat.dtd
    
    NCBI_ScoreMat.mod.dtd
    
    NCBI_SeqCode.dtd
    
    NCBI_SeqCode.mod.dtd
    
    NCBI_SeqTable.dtd
    
    NCBI_SeqTable.mod.dtd
    
    NCBI_Seq_split.dtd
    
    NCBI_Seq_split.mod.dtd
    
    NCBI_Seqalign.dtd
    
    NCBI_Seqalign.mod.dtd
    
    NCBI_Seqfeat.dtd
    
    NCBI_Seqfeat.mod.dtd
    
    NCBI_Seqloc.dtd
    
    NCBI_Seqloc.mod.dtd
    
    NCBI_Seqres.dtd
    
    NCBI_Seqres.mod.dtd
    
    NCBI_Seqset.dtd
    
    NCBI_Seqset.mod.dtd
    
    NCBI_Sequence.dtd
    
    NCBI_Sequence.mod.dtd
    
    NCBI_Submit.dtd
    
    NCBI_Submit.mod.dtd
    
    NCBI_Systems.dtd
    
    NCBI_TSeq.dtd
    
    NCBI_TSeq.mod.dtd
    
    NCBI_TxInit.dtd
    
    NCBI_TxInit.mod.dtd
    
    NCBI_Variation.dtd
    
    NCBI_Variation.mod.dtd
    
    NCBI_all.dtd
    
    NSE.dtd
    
    NSE.mod.dtd
    
    OMSSA.dtd
    
    OMSSA.mod.dtd
    
    PDB_General.dtd
    
    PDB_General.mod.dtd
    
    PIR_General.dtd
    
    PIR_General.mod.dtd
    
    PRF_General.dtd
    
    PRF_General.mod.dtd
    
    SP_General.dtd
    
    SP_General.mod.dtd
    
    XHTMLtablesetup.ent
    
    archivearticle.dtd
    
    archivecustom-classes.ent
    
    archivecustom-mixes.ent
    
    archivecustom-models.ent
    
    archivecustom-modules.ent
    
    articlemeta.ent
    
    backmatter.ent
    
    bookdoc_100301.dtd
    
    bookdoc_110101.dtd
    
    bookdoc_120101.dtd
    
    bookdoc_130101.dtd
    
    bookdoc_140101.dtd
    
    bookdoc_150101.dtd
    
    chars.ent
    
    common.ent
    
    default-classes.ent
    
    default-mixes.ent
    
    display.ent
    
    eInfo_020511.dtd
    
    eLink_090910.dtd
    
    eLink_101123.dtd
    
    ePost_020511.dtd
    
    eSearch_020511.dtd
    
    eSpell.dtd
    
    eSummary_041029.dtd
    
    egquery.dtd
    
    einfo.dtd
    
    elink_020122.dtd
    
    esearch.dtd
    
    esummary-v1.dtd
    
    format.ent
    
    htmltable.dtd
    
    isoamsa.ent
    
    isoamsb.ent
    
    isoamsc.ent
    
    isoamsn.ent
    
    isoamso.ent
    
    isoamsr.ent
    
    isobox.ent
    
    isocyr1.ent
    
    isocyr2.ent
    
    isodia.ent
    
    isogrk1.ent
    
    isogrk2.ent
    
    isogrk3.ent
    
    isogrk4.ent
    
    isolat1.ent
    
    isolat2.ent
    
    isomfrk.ent
    
    isomopf.ent
    
    isomscr.ent
    
    isonum.ent
    
    isopub.ent
    
    isotech.ent
    
    journalmeta.ent
    
    link.ent
    
    list.ent
    
    math.ent
    
    mathml-in-pubmed.mod
    
    mathml2-qname-1.mod
    
    mathml2.dtd
    
    mathml3-qname1.mod
    
    mathml3.dtd
    
    mathmlsetup.ent
    
    mmlalias.ent
    
    mmlextra.ent
    
    modules.ent
    
    nlm-articleset-2.0.dtd
    
    nlmcatalogrecordset_170601.dtd
    
    nlmcommon_011101.dtd
    
    nlmcommon_080101.dtd
    
    nlmcommon_090101.dtd
    
    nlmmedline_011101.dtd
    
    nlmmedline_080101.dtd
    
    nlmmedline_090101.dtd
    
    nlmmedlinecitation_011101.dtd
    
    nlmmedlinecitation_080101.dtd
    
    nlmmedlinecitation_090101.dtd
    
    nlmmedlinecitationset_100101.dtd
    
    nlmmedlinecitationset_100301.dtd
    
    nlmmedlinecitationset_110101.dtd
    
    nlmmedlinecitationset_120101.dtd
    
    nlmmedlinecitationset_130101.dtd
    
    nlmmedlinecitationset_130501.dtd
    
    nlmmedlinecitationset_140101.dtd
    
    nlmmedlinecitationset_150101.dtd
    
    nlmserials_080101.dtd
    
    nlmserials_100101.dtd
    
    nlmsharedcatcit_080101.dtd
    
    nlmsharedcatcit_090101.dtd
    
    notat.ent
    
    para.ent
    
    phrase.ent
    
    pmc-1.dtd
    
    pubmed_020114.dtd
    
    pubmed_080101.dtd
    
    pubmed_090101.dtd
    
    pubmed_100101.dtd
    
    pubmed_100301.dtd
    
    pubmed_110101.dtd
    
    pubmed_120101.dtd
    
    pubmed_130101.dtd
    
    pubmed_130501.dtd
    
    pubmed_140101.dtd
    
    pubmed_150101.dtd
    
    pubmed_180101.dtd
    
    pubmed_180601.dtd
    
    pubmed_190101.dtd
    
    references.ent
    
    section.ent
    
    taxon.dtd
    
    xmlspecchars.ent
    
    Parser.py
    
    Parser.pyc
    
    Parser.pyo
    
    XSDs
    
    IPGReportSet.xsd
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    ExPASy
    
    Enzyme.py
    
    Enzyme.pyc
    
    Enzyme.pyo
    
    Prodoc.py
    
    Prodoc.pyc
    
    Prodoc.pyo
    
    Prosite.py
    
    Prosite.pyc
    
    Prosite.pyo
    
    ScanProsite.py
    
    ScanProsite.pyc
    
    ScanProsite.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    cellosaurus.py
    
    cellosaurus.pyc
    
    cellosaurus.pyo
    
    FSSP
    
    FSSPTools.py
    
    FSSPTools.pyc
    
    FSSPTools.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    fssp_rec.py
    
    fssp_rec.pyc
    
    fssp_rec.pyo
    
    File.py
    
    File.pyc
    
    File.pyo
    
    GenBank
    
    Record.py
    
    Record.pyc
    
    Record.pyo
    
    Scanner.py
    
    Scanner.pyc
    
    Scanner.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    utils.py
    
    utils.pyc
    
    utils.pyo
    
    Geo
    
    Record.py
    
    Record.pyc
    
    Record.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    Graphics
    
    BasicChromosome.py
    
    BasicChromosome.pyc
    
    BasicChromosome.pyo
    
    ColorSpiral.py
    
    ColorSpiral.pyc
    
    ColorSpiral.pyo
    
    Comparative.py
    
    Comparative.pyc
    
    Comparative.pyo
    
    DisplayRepresentation.py
    
    DisplayRepresentation.pyc
    
    DisplayRepresentation.pyo
    
    Distribution.py
    
    Distribution.pyc
    
    Distribution.pyo
    
    GenomeDiagram
    
    _AbstractDrawer.py
    
    _AbstractDrawer.pyc
    
    _AbstractDrawer.pyo
    
    _CircularDrawer.py
    
    _CircularDrawer.pyc
    
    _CircularDrawer.pyo
    
    _Colors.py
    
    _Colors.pyc
    
    _Colors.pyo
    
    _CrossLink.py
    
    _CrossLink.pyc
    
    _CrossLink.pyo
    
    _Diagram.py
    
    _Diagram.pyc
    
    _Diagram.pyo
    
    _Feature.py
    
    _Feature.pyc
    
    _Feature.pyo
    
    _FeatureSet.py
    
    _FeatureSet.pyc
    
    _FeatureSet.pyo
    
    _Graph.py
    
    _Graph.pyc
    
    _Graph.pyo
    
    _GraphSet.py
    
    _GraphSet.pyc
    
    _GraphSet.pyo
    
    _LinearDrawer.py
    
    _LinearDrawer.pyc
    
    _LinearDrawer.pyo
    
    _Track.py
    
    _Track.pyc
    
    _Track.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    KGML_vis.py
    
    KGML_vis.pyc
    
    KGML_vis.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    HMM
    
    DynamicProgramming.py
    
    DynamicProgramming.pyc
    
    DynamicProgramming.pyo
    
    MarkovModel.py
    
    MarkovModel.pyc
    
    MarkovModel.pyo
    
    Trainer.py
    
    Trainer.pyc
    
    Trainer.pyo
    
    Utilities.py
    
    Utilities.pyc
    
    Utilities.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    Index.py
    
    Index.pyc
    
    Index.pyo
    
    KDTree
    
    KDTree.c
    
    KDTree.h
    
    KDTree.py
    
    KDTree.pyc
    
    KDTree.pyo
    
    KDTreemodule.c
    
    Neighbor.h
    
    _CKDTree.so
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    KEGG
    
    Compound
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    Enzyme
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    Gene
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    KGML
    
    KGML_parser.py
    
    KGML_parser.pyc
    
    KGML_parser.pyo
    
    KGML_pathway.py
    
    KGML_pathway.pyc
    
    KGML_pathway.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    Map
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    REST.py
    
    REST.pyc
    
    REST.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    LogisticRegression.py
    
    LogisticRegression.pyc
    
    LogisticRegression.pyo
    
    MarkovModel.py
    
    MarkovModel.pyc
    
    MarkovModel.pyo
    
    MaxEntropy.py
    
    MaxEntropy.pyc
    
    MaxEntropy.pyo
    
    Medline
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    NMR
    
    NOEtools.py
    
    NOEtools.pyc
    
    NOEtools.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    xpktools.py
    
    xpktools.pyc
    
    xpktools.pyo
    
    NaiveBayes.py
    
    NaiveBayes.pyc
    
    NaiveBayes.pyo
    
    Nexus
    
    Nexus.py
    
    Nexus.pyc
    
    Nexus.pyo
    
    Nodes.py
    
    Nodes.pyc
    
    Nodes.pyo
    
    StandardData.py
    
    StandardData.pyc
    
    StandardData.pyo
    
    Trees.py
    
    Trees.pyc
    
    Trees.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    cnexus.c
    
    cnexus.so
    
    PDB
    
    AbstractPropertyMap.py
    
    AbstractPropertyMap.pyc
    
    AbstractPropertyMap.pyo
    
    Atom.py
    
    Atom.pyc
    
    Atom.pyo
    
    Chain.py
    
    Chain.pyc
    
    Chain.pyo
    
    DSSP.py
    
    DSSP.pyc
    
    DSSP.pyo
    
    Dice.py
    
    Dice.pyc
    
    Dice.pyo
    
    Entity.py
    
    Entity.pyc
    
    Entity.pyo
    
    FragmentMapper.py
    
    FragmentMapper.pyc
    
    FragmentMapper.pyo
    
    HSExposure.py
    
    HSExposure.pyc
    
    HSExposure.pyo
    
    MMCIF2Dict.py
    
    MMCIF2Dict.pyc
    
    MMCIF2Dict.pyo
    
    MMCIFParser.py
    
    MMCIFParser.pyc
    
    MMCIFParser.pyo
    
    Model.py
    
    Model.pyc
    
    Model.pyo
    
    NACCESS.py
    
    NACCESS.pyc
    
    NACCESS.pyo
    
    NeighborSearch.py
    
    NeighborSearch.pyc
    
    NeighborSearch.pyo
    
    PDBExceptions.py
    
    PDBExceptions.pyc
    
    PDBExceptions.pyo
    
    PDBIO.py
    
    PDBIO.pyc
    
    PDBIO.pyo
    
    PDBList.py
    
    PDBList.pyc
    
    PDBList.pyo
    
    PDBParser.py
    
    PDBParser.pyc
    
    PDBParser.pyo
    
    PSEA.py
    
    PSEA.pyc
    
    PSEA.pyo
    
    Polypeptide.py
    
    Polypeptide.pyc
    
    Polypeptide.pyo
    
    QCPSuperimposer
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    qcprotmodule.c
    
    qcprotmodule.so
    
    Residue.py
    
    Residue.pyc
    
    Residue.pyo
    
    ResidueDepth.py
    
    ResidueDepth.pyc
    
    ResidueDepth.pyo
    
    Selection.py
    
    Selection.pyc
    
    Selection.pyo
    
    Structure.py
    
    Structure.pyc
    
    Structure.pyo
    
    StructureAlignment.py
    
    StructureAlignment.pyc
    
    StructureAlignment.pyo
    
    StructureBuilder.py
    
    StructureBuilder.pyc
    
    StructureBuilder.pyo
    
    Superimposer.py
    
    Superimposer.pyc
    
    Superimposer.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    kdtrees.c
    
    kdtrees.so
    
    mmcifio.py
    
    mmcifio.pyc
    
    mmcifio.pyo
    
    mmtf
    
    DefaultParser.py
    
    DefaultParser.pyc
    
    DefaultParser.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    mmtfio.py
    
    mmtfio.pyc
    
    mmtfio.pyo
    
    parse_pdb_header.py
    
    parse_pdb_header.pyc
    
    parse_pdb_header.pyo
    
    vectors.py
    
    vectors.pyc
    
    vectors.pyo
    
    Pathway
    
    Rep
    
    Graph.py
    
    Graph.pyc
    
    Graph.pyo
    
    MultiGraph.py
    
    MultiGraph.pyc
    
    MultiGraph.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    Phylo
    
    Applications
    
    _Fasttree.py
    
    _Fasttree.pyc
    
    _Fasttree.pyo
    
    _Phyml.py
    
    _Phyml.pyc
    
    _Phyml.pyo
    
    _Raxml.py
    
    _Raxml.pyc
    
    _Raxml.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    BaseTree.py
    
    BaseTree.pyc
    
    BaseTree.pyo
    
    CDAO.py
    
    CDAO.pyc
    
    CDAO.pyo
    
    CDAOIO.py
    
    CDAOIO.pyc
    
    CDAOIO.pyo
    
    Consensus.py
    
    Consensus.pyc
    
    Consensus.pyo
    
    NeXML.py
    
    NeXML.pyc
    
    NeXML.pyo
    
    NeXMLIO.py
    
    NeXMLIO.pyc
    
    NeXMLIO.pyo
    
    Newick.py
    
    Newick.pyc
    
    Newick.pyo
    
    NewickIO.py
    
    NewickIO.pyc
    
    NewickIO.pyo
    
    NexusIO.py
    
    NexusIO.pyc
    
    NexusIO.pyo
    
    PAML
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    _paml.py
    
    _paml.pyc
    
    _paml.pyo
    
    _parse_baseml.py
    
    _parse_baseml.pyc
    
    _parse_baseml.pyo
    
    _parse_codeml.py
    
    _parse_codeml.pyc
    
    _parse_codeml.pyo
    
    _parse_yn00.py
    
    _parse_yn00.pyc
    
    _parse_yn00.pyo
    
    baseml.py
    
    baseml.pyc
    
    baseml.pyo
    
    chi2.py
    
    chi2.pyc
    
    chi2.pyo
    
    codeml.py
    
    codeml.pyc
    
    codeml.pyo
    
    yn00.py
    
    yn00.pyc
    
    yn00.pyo
    
    PhyloXML.py
    
    PhyloXML.pyc
    
    PhyloXML.pyo
    
    PhyloXMLIO.py
    
    PhyloXMLIO.pyc
    
    PhyloXMLIO.pyo
    
    TreeConstruction.py
    
    TreeConstruction.pyc
    
    TreeConstruction.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    _cdao_owl.py
    
    _cdao_owl.pyc
    
    _cdao_owl.pyo
    
    _io.py
    
    _io.pyc
    
    _io.pyo
    
    _utils.py
    
    _utils.pyc
    
    _utils.pyo
    
    PopGen
    
    GenePop
    
    Controller.py
    
    Controller.pyc
    
    Controller.pyo
    
    EasyController.py
    
    EasyController.pyc
    
    EasyController.pyo
    
    FileParser.py
    
    FileParser.pyc
    
    FileParser.pyo
    
    LargeFileParser.py
    
    LargeFileParser.pyc
    
    LargeFileParser.pyo
    
    Utils.py
    
    Utils.pyc
    
    Utils.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    Restriction
    
    PrintFormat.py
    
    PrintFormat.pyc
    
    PrintFormat.pyo
    
    Restriction.py
    
    Restriction.pyc
    
    Restriction.pyo
    
    Restriction_Dictionary.py
    
    Restriction_Dictionary.pyc
    
    Restriction_Dictionary.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    SCOP
    
    Cla.py
    
    Cla.pyc
    
    Cla.pyo
    
    Des.py
    
    Des.pyc
    
    Des.pyo
    
    Dom.py
    
    Dom.pyc
    
    Dom.pyo
    
    Hie.py
    
    Hie.pyc
    
    Hie.pyo
    
    Raf.py
    
    Raf.pyc
    
    Raf.pyo
    
    Residues.py
    
    Residues.pyc
    
    Residues.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    SVDSuperimposer
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    SearchIO
    
    BlastIO
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    blast_tab.py
    
    blast_tab.pyc
    
    blast_tab.pyo
    
    blast_text.py
    
    blast_text.pyc
    
    blast_text.pyo
    
    blast_xml.py
    
    blast_xml.pyc
    
    blast_xml.pyo
    
    BlatIO.py
    
    BlatIO.pyc
    
    BlatIO.pyo
    
    ExonerateIO
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    _base.py
    
    _base.pyc
    
    _base.pyo
    
    exonerate_cigar.py
    
    exonerate_cigar.pyc
    
    exonerate_cigar.pyo
    
    exonerate_text.py
    
    exonerate_text.pyc
    
    exonerate_text.pyo
    
    exonerate_vulgar.py
    
    exonerate_vulgar.pyc
    
    exonerate_vulgar.pyo
    
    FastaIO.py
    
    FastaIO.pyc
    
    FastaIO.pyo
    
    HHsuiteIO
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    hhsuite2_text.py
    
    hhsuite2_text.pyc
    
    hhsuite2_text.pyo
    
    HmmerIO
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    _base.py
    
    _base.pyc
    
    _base.pyo
    
    hmmer2_text.py
    
    hmmer2_text.pyc
    
    hmmer2_text.pyo
    
    hmmer3_domtab.py
    
    hmmer3_domtab.pyc
    
    hmmer3_domtab.pyo
    
    hmmer3_tab.py
    
    hmmer3_tab.pyc
    
    hmmer3_tab.pyo
    
    hmmer3_text.py
    
    hmmer3_text.pyc
    
    hmmer3_text.pyo
    
    InterproscanIO
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    interproscan_xml.py
    
    interproscan_xml.pyc
    
    interproscan_xml.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    _index.py
    
    _index.pyc
    
    _index.pyo
    
    _legacy
    
    NCBIStandalone.py
    
    NCBIStandalone.pyc
    
    NCBIStandalone.pyo
    
    ParserSupport.py
    
    ParserSupport.pyc
    
    ParserSupport.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    _model
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    _base.py
    
    _base.pyc
    
    _base.pyo
    
    hit.py
    
    hit.pyc
    
    hit.pyo
    
    hsp.py
    
    hsp.pyc
    
    hsp.pyo
    
    query.py
    
    query.pyc
    
    query.pyo
    
    _utils.py
    
    _utils.pyc
    
    _utils.pyo
    
    Seq.py
    
    Seq.pyc
    
    Seq.pyo
    
    SeqFeature.py
    
    SeqFeature.pyc
    
    SeqFeature.pyo
    
    SeqIO
    
    AbiIO.py
    
    AbiIO.pyc
    
    AbiIO.pyo
    
    AceIO.py
    
    AceIO.pyc
    
    AceIO.pyo
    
    FastaIO.py
    
    FastaIO.pyc
    
    FastaIO.pyo
    
    GckIO.py
    
    GckIO.pyc
    
    GckIO.pyo
    
    IgIO.py
    
    IgIO.pyc
    
    IgIO.pyo
    
    InsdcIO.py
    
    InsdcIO.pyc
    
    InsdcIO.pyo
    
    Interfaces.py
    
    Interfaces.pyc
    
    Interfaces.pyo
    
    NibIO.py
    
    NibIO.pyc
    
    NibIO.pyo
    
    PdbIO.py
    
    PdbIO.pyc
    
    PdbIO.pyo
    
    PhdIO.py
    
    PhdIO.pyc
    
    PhdIO.pyo
    
    PirIO.py
    
    PirIO.pyc
    
    PirIO.pyo
    
    QualityIO.py
    
    QualityIO.pyc
    
    QualityIO.pyo
    
    SeqXmlIO.py
    
    SeqXmlIO.pyc
    
    SeqXmlIO.pyo
    
    SffIO.py
    
    SffIO.pyc
    
    SffIO.pyo
    
    SnapGeneIO.py
    
    SnapGeneIO.pyc
    
    SnapGeneIO.pyo
    
    SwissIO.py
    
    SwissIO.pyc
    
    SwissIO.pyo
    
    TabIO.py
    
    TabIO.pyc
    
    TabIO.pyo
    
    UniprotIO.py
    
    UniprotIO.pyc
    
    UniprotIO.pyo
    
    XdnaIO.py
    
    XdnaIO.pyc
    
    XdnaIO.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    _convert.py
    
    _convert.pyc
    
    _convert.pyo
    
    _index.py
    
    _index.pyc
    
    _index.pyo
    
    SeqRecord.py
    
    SeqRecord.pyc
    
    SeqRecord.pyo
    
    SeqUtils
    
    CheckSum.py
    
    CheckSum.pyc
    
    CheckSum.pyo
    
    CodonUsage.py
    
    CodonUsage.pyc
    
    CodonUsage.pyo
    
    CodonUsageIndices.py
    
    CodonUsageIndices.pyc
    
    CodonUsageIndices.pyo
    
    IsoelectricPoint.py
    
    IsoelectricPoint.pyc
    
    IsoelectricPoint.pyo
    
    MeltingTemp.py
    
    MeltingTemp.pyc
    
    MeltingTemp.pyo
    
    ProtParam.py
    
    ProtParam.pyc
    
    ProtParam.pyo
    
    ProtParamData.py
    
    ProtParamData.pyc
    
    ProtParamData.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    lcc.py
    
    lcc.pyc
    
    lcc.pyo
    
    Sequencing
    
    Ace.py
    
    Ace.pyc
    
    Ace.pyo
    
    Applications
    
    _Novoalign.py
    
    _Novoalign.pyc
    
    _Novoalign.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    _bwa.py
    
    _bwa.pyc
    
    _bwa.pyo
    
    _samtools.py
    
    _samtools.pyc
    
    _samtools.pyo
    
    Phd.py
    
    Phd.pyc
    
    Phd.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    Statistics
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    lowess.py
    
    lowess.pyc
    
    lowess.pyo
    
    SubsMat
    
    FreqTable.py
    
    FreqTable.pyc
    
    FreqTable.pyo
    
    MatrixInfo.py
    
    MatrixInfo.pyc
    
    MatrixInfo.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    SwissProt
    
    KeyWList.py
    
    KeyWList.pyc
    
    KeyWList.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    TogoWS
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    UniGene
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    UniProt
    
    GOA.py
    
    GOA.pyc
    
    GOA.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    Wise
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    dnal.py
    
    dnal.pyc
    
    dnal.pyo
    
    psw.py
    
    psw.pyc
    
    psw.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    _py3k
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    _utils.py
    
    _utils.pyc
    
    _utils.pyo
    
    bgzf.py
    
    bgzf.pyc
    
    bgzf.pyo
    
    codonalign
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    chisq.py
    
    chisq.pyc
    
    chisq.pyo
    
    codonalignment.py
    
    codonalignment.pyc
    
    codonalignment.pyo
    
    codonalphabet.py
    
    codonalphabet.pyc
    
    codonalphabet.pyo
    
    codonseq.py
    
    codonseq.pyc
    
    codonseq.pyo
    
    cpairwise2.so
    
    cpairwise2module.c
    
    kNN.py
    
    kNN.pyc
    
    kNN.pyo
    
    motifs
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    _pwm.c
    
    _pwm.so
    
    alignace.py
    
    alignace.pyc
    
    alignace.pyo
    
    applications
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    _xxmotif.py
    
    _xxmotif.pyc
    
    _xxmotif.pyo
    
    clusterbuster.py
    
    clusterbuster.pyc
    
    clusterbuster.pyo
    
    jaspar
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    db.py
    
    db.pyc
    
    db.pyo
    
    mast.py
    
    mast.pyc
    
    mast.pyo
    
    matrix.py
    
    matrix.pyc
    
    matrix.pyo
    
    meme.py
    
    meme.pyc
    
    meme.pyo
    
    minimal.py
    
    minimal.pyc
    
    minimal.pyo
    
    pfm.py
    
    pfm.pyc
    
    pfm.pyo
    
    thresholds.py
    
    thresholds.pyc
    
    thresholds.pyo
    
    transfac.py
    
    transfac.pyc
    
    transfac.pyo
    
    xms.py
    
    xms.pyc
    
    xms.pyo
    
    pairwise2.py
    
    pairwise2.pyc
    
    pairwise2.pyo
    
    phenotype
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    phen_micro.py
    
    phen_micro.pyc
    
    phen_micro.pyo
    
    pm_fitting.py
    
    pm_fitting.pyc
    
    pm_fitting.pyo
    
    trie.c
    
    trie.h
    
    trie.so
    
    triefind.py
    
    triefind.pyc
    
    triefind.pyo
    
    triemodule.c
    
    BioSQL
    
    BioSeq.py
    
    BioSeq.pyc
    
    BioSeq.pyo
    
    BioSeqDatabase.py
    
    BioSeqDatabase.pyc
    
    BioSeqDatabase.pyo
    
    DBUtils.py
    
    DBUtils.pyc
    
    DBUtils.pyo
    
    Loader.py
    
    Loader.pyc
    
    Loader.pyo
    
    __init__.py
    
    __init__.pyc
    
    __init__.pyo
    
    biopython-1.75-py2.7.egg-info
    
    PKG-INFO
    
    SOURCES.txt
    
    dependency_links.txt
    
    requires.txt
    
    top_level.txt
  - share
    
    doc
    
    python2-biopython-1.75
    
    CONTRIB.rst
    
    DEPRECATED.rst
    
    NEWS.rst
    
    README.rst
    
    Scripts
    
    GenBank
    
    check_output.py
    
    check_output_simple.py
    
    PDB
    
    generate_three_to_one_dict.py
    
    Performance
    
    biosql_performance_load.py
    
    biosql_performance_read.py
    
    Restriction
    
    ranacompiler.py
    
    rebase_update.py
    
    SeqGui
    
    SeqGui.py
    
    Structure
    
    hsexpo
    
    debug
    
    debug_blast_parser.py
    
    query_pubmed.py
    
    scop_pdb.py
    
    update_ncbi_codon_table.py
    
    xbbtools
    
    README
    
    nextorf.py
    
    test.fas
    
    testrp.fas
    
    xbb_blast.py
    
    xbb_blastbg.py
    
    xbb_help.py
    
    xbb_search.py
    
    xbb_translations.py
    
    xbb_utils.py
    
    xbb_widget.py
    
    xbbtools.py
    
    licenses
    
    python2-biopython-1.75
    
    LICENSE.rst